| allDynamicImages | Supremo | private |
| allDynamicPyramids | Supremo | private |
| bSplineBendingEnergyWeight | Supremo | private |
| bSplineCPGSpacing | Supremo | private |
| bSplineLinearEnergyWeight | Supremo | private |
| CheckParameters() | Supremo | private |
| correspondenceModel | Supremo | private |
| currentLevel | Supremo | private |
| currentReferenceStateImage | Supremo | private |
| defSpaceImage | Supremo | private |
| DisplayCurrentLevelParameters(unsigned int level) | Supremo | private |
| finalMoCoReconImage | Supremo | private |
| FitMotionModelAndReconstruct() | Supremo | |
| GenerateDVFsFromCorrespondenceModel() | Supremo | |
| GetCorrespondenceModelAsImage() | Supremo | |
| GetMotionCompensatedReconstructedImage() | Supremo | inline |
| imageAcquisition | Supremo | private |
| Initialise() | Supremo | private |
| initialised | Supremo | private |
| inputRCMImages | Supremo | private |
| levelID | Supremo | private |
| maxModelFitIterationNumber | Supremo | private |
| maxSwitchIterationNumber | Supremo | private |
| mocoReconstructor | Supremo | private |
| numberOfDynamicImages | Supremo | private |
| numberOfLevels | Supremo | private |
| numberOfLevelsToPerform | Supremo | private |
| numberOfSurrogateSignals | Supremo | private |
| outputInterGradientFolder | Supremo | private |
| outputInterMCRFolder | Supremo | private |
| referenceStateImage | Supremo | private |
| referenceStatePyramid | Supremo | private |
| SaveInterMCRToImage(nifti_image *mcrImage) | Supremo | private |
| SetBSplineBendingEnergy(float be) | Supremo | |
| SetBSplineCPGSpacing(float sx, float sy, float sz) | Supremo | |
| SetBSplineLinearEnergy(float le) | Supremo | |
| SetDefSpaceImage(nifti_image *defSpaceImageIn) | Supremo | |
| SetDynamicImages(nifti_image **dynamicImagesIn, int numberOfDynamicImagesIn) | Supremo | |
| SetImageAcquisition(std::shared_ptr< ImageAcquisition > imageAcquisitionIn) | Supremo | |
| SetInputRCMImages(const std::vector< nifti_image * > &inputRCMImgs) | Supremo | inline |
| SetInterGradOutputFolder(const std::string &outputFolder) | Supremo | |
| SetInterMCROutputFolder(const std::string &outputFolder) | Supremo | |
| SetMaxModelFittingIterationNumber(unsigned int maxModelFittingIterations) | Supremo | inline |
| SetMaxSwitchIterationNumber(unsigned int maxSwitchIterations) | Supremo | inline |
| SetMotionCompensatedReconstruction(std::shared_ptr< MoCoRecon > mocoReconstructionIn) | Supremo | |
| SetNumberOfPyramidLevels(unsigned int numberOfLevelsIn) | Supremo | inline |
| SetNumberOfPyramidLevelsToPerform(unsigned int numberOfLevelsToPerformIn) | Supremo | inline |
| SetReferenceStateImage(nifti_image *referenceStateImageIn) | Supremo | |
| SetSlidingGapOverlapConstraintWeight(float gapOverlapConstraintWeightIn) | Supremo | |
| SetSlidingTrafoDistanceMap(nifti_image *slidingTrafoDistanceMapIn) | Supremo | |
| SetSurrogateSignals(float *surrogateSignalsIn, int numberOfSurrogateSignalsIn) | Supremo | |
| SetTransformationType(t_transformationType transformationTypeIn) | Supremo | |
| similarityMeasure | Supremo | private |
| SimulateDynamicImages() | Supremo | |
| slidingGapOverlapConstraintWeight | Supremo | private |
| slidingSignedDistanceMapImage | Supremo | private |
| Supremo() | Supremo | |
| surrogateSignals | Supremo | private |
| transform | Supremo | private |
| transformationType | Supremo | private |
| VoxelType typedef | Supremo | |
| ~Supremo() | Supremo | |
